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Segmented volumes were converted to three-dimensional triangulated surface models of all anatomical structures. The bone segment was additionally exported as a voxel model as per the requirements of surgical simulators. Triangulation was performed in 3D Slicer and included moderate smoothing during model creation. Finally, the mesh quality and complexity were optimized using free software tools Graphite, Meshlab and Meshmixer (Autodesk, San Rafael, CA, USA).
As a result of the described process we are able to provide three-dimensionally reconstructed, co-registered sets of CBCT scans and micro-slicing colour images of the human temporal bone. Eight digitized human temporal bones were uploaded to the Zenodo open access research data repository and are available for download free of charge through a permanent Digital Object Identifier (DOI) (Data Citation 1). They may be shared, used and adapted even for commercial use with the requirement of attributing to this original work as per a Creative Commons Attribution 4.0 License.
For viewing of the data, 3D Slicer is the recommended free software package which was also used during the creation of the datasets, however there are numerous software options to work with TIFF, DICOM or NRRD data which may be considered.
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As UMBC moves online for the Spring 2020 semester, we have listed some of the computer software or mobile apps that you may want to download to support your efforts in your classes. If you have questions, please enter a support ticket and we will be in contact with you.
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The authors include a visualization add on using in a point in click software package which that is very friendly to use. During the use of the software and using Figure 4 as an example, a download button is not available for the graphs produced. Additionally, for one the images produced with plotly on the shiny visuals, only the default download option is available. Maybe perhaps a high res image download option or a reproducible code would be useful to allow one to export high quality graphs for publications or presentations. 1e1e36bf2d